SRR3557707.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557707.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3051386
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34733	1.138269625671744	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17317	0.5675125991926292	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12433	0.40745418639267533	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6399	0.20970798188102063	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4732	0.15507706989545078	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3851	0.12620494424500867	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3583	0.11742205017654272	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3263	0.10693501248285205	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3198	0.10480483295132115	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	630	53.82529	1
ACAACGC	595	37.95697	3
TAACGCA	695	35.916115	4
AACGCAG	35935	35.65792	6
GTATCAA	35125	35.076466	1
TACAACG	665	33.963722	2
AAACGCA	805	33.223206	5
CATGGGG	9640	32.36735	4
ACGCAGA	39730	32.26684	7
CGCAGAG	39980	32.183994	8
ACATGGG	34125	31.801893	3
TACATGG	36180	30.868217	2
GTACATG	36405	30.689276	1
TATCAAC	40085	30.633863	2
ATCAACG	40005	30.633688	3
GCAGAGT	42120	30.520597	9
TCAACGC	41005	30.480865	4
CAACGCA	41505	30.185272	5
CATGGGC	7960	30.164295	4
CATGGGT	3750	30.112528	4