SRR3557697.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557697.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2957913
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46497	1.5719529276216035	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22505	0.7608404980132952	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16459	0.5564396248300745	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8189	0.2768506037871972	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5451	0.1842853390211274	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4273	0.14445996214222662	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3998	0.13516286652109105	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3449	0.11660248289926038	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	3123	0.10558119863565966	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	3016	0.10196378324852692	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2980	0.10074670891266917	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AACGCAG	36180	44.422974	6
GTATCAA	36010	43.457127	1
CGCATAG	615	39.65263	1
ACGCAGA	41175	39.077267	7
CGCAGAG	41440	38.913437	8
GCAGAGT	43380	37.2691	9
TATCAAC	42030	37.236458	2
ATCAACG	42305	37.134277	3
TCAACGC	42990	36.971195	4
CAACGCA	43560	36.446472	5
GTACATG	33885	33.351044	1
TAACGCA	590	33.24539	4
ACATGGG	33185	33.153862	3
TACATGG	33915	33.089256	2
TACAACG	580	30.744692	2
CATGGGG	9825	30.551207	4
CATGGGC	8060	30.014347	4
AGAGTAC	42860	30.003662	10-11
TATCACG	445	29.385939	2
AGATTAC	1195	28.352007	2