SRR3557691.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557691.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2431035
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41394	1.702731552610308	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20145	0.8286593981575748	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15528	0.6387402896297256	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7403	0.30452050258429025	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4220	0.1735886155485215	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3742	0.15392620838449467	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3687	0.15166379751834094	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3503	0.14409500480248125	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3457	0.14220280662351634	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3297	0.13562124774016004	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3017	0.12410351969428658	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2975	0.12237586048740558	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2923	0.12023685385031478	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2827	0.11628791852030101	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2676	0.11007657232413354	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2630	0.10818437414516861	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	2572	0.10579855904995197	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	495	48.074436	1
GTATCAA	36540	40.475475	1
AACGCAG	37400	40.360523	6
GACCGTT	400	37.142803	7
CGCAGAG	42050	35.939747	8
ACGCAGA	41945	35.93054	7
CATGGGT	4910	35.221367	4
TATCAAC	42345	34.693645	2
ATCAACG	42770	34.362087	3
GCAGAGT	44145	34.247612	9
TCAACGC	43810	34.03471	4
CAACGCA	44190	33.795834	5
CATGGGG	8600	32.823875	4
AGATTAC	945	32.702065	2
ACATGGG	34445	32.591206	3
TAACGCA	515	32.31063	4
GTACATG	35900	32.14894	1
TACATGG	36015	32.01267	2
ACGGTAC	565	31.554949	3
ACAACGC	475	31.278149	3