SRR3557690.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557690.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2207452
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27334	1.2382602203807829	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13197	0.597838593998873	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10120	0.45844711459184617	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4800	0.21744527174316813	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2949	0.1335929388272089	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2702	0.12240356755209172	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2532	0.11470238084452118	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2392	0.10836022708534546	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	24590	39.98055	1
AACGCAG	25900	38.71192	6
CGCATAG	425	36.384705	1
ACGCAGA	28920	34.73104	7
CGCAGAG	29165	34.459663	8
TACAACG	415	34.37103	2
TATCAAC	28670	34.1425	2
ATCAACG	28970	33.62481	3
ACAACGC	390	33.526443	3
TCAACGC	29505	33.458263	4
CAACGCA	29715	33.141804	5
GCAGAGT	30805	32.644386	9
ACATGGG	24725	31.777853	3
GTACATG	26115	31.33739	1
CATGGGT	3075	31.311167	4
TATCACG	440	31.067375	2
TACATGG	26295	30.988008	2
GTATAAC	630	29.265476	1
CATGGGG	7685	29.15593	4
TAACGCA	490	29.110157	4