SRR3557687.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557687.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3369258
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39897	1.1841479637356356	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20770	0.6164562048973394	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14747	0.43769280951473594	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7282	0.21613067328177302	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4711	0.1398230708363681	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4288	0.12726837778525718	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4056	0.12038258868866676	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3750	0.11130047031126734	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3740	0.11100366905710396	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	675	43.195213	1
GTATCAA	37920	39.323853	1
AACGCAG	38975	38.841507	6
TAACGCA	680	37.585403	4
ACGCAGA	43425	34.874886	7
CGCAGAG	43665	34.710426	8
ACATGGG	38060	33.57603	3
ATCAACG	44415	33.38878	3
TATCAAC	44480	33.340977	2
CATGGGT	6055	33.27708	4
GTACATG	39520	33.16965	1
TCAACGC	45215	33.100372	4
GCAGAGT	46070	32.937134	9
TACATGG	39645	32.924297	2
CAACGCA	45775	32.694942	5
CATGGGG	10425	32.38411	4
ATGGGTG	3765	29.205185	5
TATCACG	490	29.113049	2
CATGGGC	8995	29.008348	4
GTACTGG	2280	28.968863	1