SRR3557672.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557672.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2132118
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46307	2.1718779167006703	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22607	1.0603071687401917	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16550	0.776223454799406	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8558	0.40138491396817627	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5885	0.2760166182171906	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4692	0.22006286706458084	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4092	0.19192183547064467	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	3947	0.1851210861687768	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3811	0.17874245234081793	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3748	0.17578764402345462	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3516	0.16490644514046596	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3365	0.1578242855226587	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	3341	0.15669864425890123	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2956	0.1386414823194589	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2811	0.13184073301759094	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2792	0.13094960035044964	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2722	0.12766647999782377	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	2229	0.10454393237147286	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	505	56.53541	1
TACAACG	420	46.697	2
AACGCAG	38450	42.428738	6
GTATCAA	40475	39.07529	1
CGCAGAG	43470	37.487972	8
ACGCAGA	43490	37.47073	7
GCAGAGT	45390	35.928413	9
GACCGTT	420	35.375683	7
TATCAAC	45245	34.875324	2
ATCAACG	45560	34.673332	3
TCAACGC	46820	34.374905	4
ATAGTAC	815	34.27398	4
CAACGCA	47295	34.116833	5
CATGGGG	7395	33.754787	4
ACAACGC	615	32.857014	3
TATCACG	435	32.790367	2
ACATGGG	33930	32.650238	3
GTACATG	35185	32.322212	1
TACATGG	35120	32.28852	2
TAGTACT	870	32.106483	5