SRR3557670.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557670.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2391713
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27042	1.1306540542280783	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13685	0.5721840371315454	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9609	0.40176225157449913	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5048	0.2110621132217787	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4199	0.17556454307017605	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3219	0.1345897271119068	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2990	0.1250149997094133	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2795	0.11686184755445156	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2739	0.11452042949969331	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2407	0.10063916531791231	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2404	0.10051373220783598	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2401	0.10038829909775965	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	450	42.30098	1
AACGCAG	27185	35.69941	6
GTATCAA	26670	35.68699	1
TAACGCA	435	34.155766	4
CATGGGG	7235	32.446796	4
ACGCAGA	30310	32.018753	7
CGCAGAG	30425	31.95633	8
TATCAAC	30435	31.145884	2
TACAACG	345	31.007494	2
ATCAACG	30625	30.91384	3
ACATGGG	25480	30.90507	3
TCAACGC	31125	30.76093	4
CAACGCA	31385	30.619074	5
TATCACG	330	30.615986	2
GCAGAGT	32065	30.247753	9
GTACATG	27345	30.194265	1
TACATGG	27370	30.095509	2
ATAACGC	605	27.505268	3
CATGGGT	2845	27.156536	4
CATGGGC	5915	26.625906	4