SRR3557662.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557662.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3394062
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24608	0.7250309511140338	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14794	0.4358788967319984	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12422	0.36599213567695577	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7932	0.23370227179114583	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6374	0.18779857291941043	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5438	0.1602209977307427	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	5368	0.15815857223586371	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5149	0.15170612675902798	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4749	0.13992083821686227	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4403	0.12972656362788895	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGT	4288	0.1263382931720163	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4019	0.11841268662740986	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	3910	0.11520119549966973	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3719	0.1095737202207856	No Hit
CTGCACATCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTT	3468	0.10217845166057661	RNA PCR Primer, Index 39 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	860	60.87863	1
ACAACGC	705	49.789433	3
TAACGCA	850	45.49553	4
AGATTAC	1735	43.206127	2
TACAACG	865	39.20424	2
GTATAAC	1045	38.71447	1
TATCACG	650	37.52708	2
ATAGTAC	1440	37.18384	4
TAGTACT	1495	35.815876	5
GATTACT	2100	35.69649	3
TCACGCA	740	35.3749	4
AAACGCA	1120	33.99666	5
GCATAGT	1580	33.512527	2
ACGCATA	320	33.465954	1
GTACAAC	1115	33.082436	1
ATAACGC	1550	31.858156	3
CATGGGT	3815	31.033646	4
CATGGGC	11985	29.982866	4
CATGGGG	9150	29.584522	4
ATTACTT	2560	29.049881	4