SRR3557658.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557658.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2497695
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19127	0.7657860547424725	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10864	0.43496103407341574	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8997	0.36021211557055605	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6822	0.2731318275449965	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4726	0.18921445572818138	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4327	0.1732397270283201	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4246	0.16999673699150616	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	4130	0.16535245496347634	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3887	0.1556234848530345	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3648	0.14605466239873163	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3600	0.14413289052506412	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT	3220	0.12891886319186288	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	3096	0.12395428585155513	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	2968	0.11882956085510842	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2662	0.10657826516047796	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	720	59.497066	1
TAACGCA	850	46.194023	4
ATAGTAC	985	43.48676	4
TAGTACT	1040	41.75902	5
GTATAAC	975	40.27494	1
TATCACG	470	39.239605	2
AGATTAC	1560	38.517452	2
TACAACG	620	37.42258	2
GCATAGT	1195	35.844734	2
ACAACGC	680	34.995472	3
GATTACT	1695	34.74772	3
CATGGGG	6505	34.570473	4
TCACGCA	555	34.30187	4
ATAACGC	1315	33.93097	3
ATCACGC	665	30.417118	3
CATGGGC	7375	30.411655	4
TACGCAG	515	30.034948	5
ACATGGG	34090	29.370945	3
CATGGGT	2875	29.177095	4
ACGGTAC	560	28.68379	3