SRR3557613.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557613.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4001877
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47559	1.1884173351654737	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22359	0.5587128240073346	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17233	0.4306229301900083	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8224	0.20550356745097365	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8174	0.20425415373835826	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7181	0.1794407974058173	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6081	0.15195369572827952	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5542	0.13848501590628598	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5499	0.13741052011343677	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4528	0.11314690581444657	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4298	0.10739960273641594	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1080	48.31437	1
TAACGCA	920	34.887333	4
AACGCAG	57285	34.58248	6
GTATCAA	57010	33.717693	1
TACAACG	740	32.12847	2
TAGTACT	1745	32.018	5
ACGCAGA	63855	31.0057	7
CGCAGAG	64225	30.91962	8
ATAGTAC	1835	30.123724	4
ACAACGC	790	30.095024	3
AAACGCA	1350	29.938976	5
GCATAGT	1800	29.718838	2
TATCAAC	64405	29.587326	2
GCAGAGT	67230	29.546436	9
ATCAACG	64680	29.443151	3
TCAACGC	66250	29.220905	4
CAACGCA	66855	28.974253	5
TATCACG	820	28.269136	2
CATGGGG	13065	28.11518	4
TCACGCA	825	28.097809	4