SRR3557609.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557609.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3380350
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35305	1.044418477376603	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18722	0.5538479743221856	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14086	0.4167024124720813	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7244	0.2142973360746668	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6782	0.20063011226648125	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5860	0.17335483012114128	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5315	0.15723223926516486	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3660	0.10827281198692443	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3609	0.10676409247563122	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3592	0.10626118597186682	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3591	0.10623160323635127	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	845	54.64495	1
TATCACG	515	39.239433	2
TACAACG	710	38.507957	2
TAACGCA	765	38.070244	4
ACAACGC	745	37.496662	3
TAGTACT	1335	34.281555	5
AGATTAC	1670	33.0992	2
ATAGTAC	1395	32.80708	4
GCATAGT	1490	31.912052	2
GATTACT	1765	31.654406	3
CATGGGG	10455	30.869303	4
AACGCAG	45975	30.85899	6
GTACTGG	2230	30.387123	1
GTATAAC	1015	30.131458	1
ACATGGG	41825	28.96138	3
TCACGCA	740	28.914907	4
CATGGGC	9410	28.612751	4
GTATCAA	47635	28.488817	1
AAACGCA	1115	28.252184	5
TACTGGT	2010	28.091734	2