SRR3557607.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557607.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4878488
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49972	1.0243337689874403	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25998	0.5329110166920571	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18671	0.3827210397975766	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9193	0.18843953290445728	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8097	0.16597355574104108	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7515	0.15404362991156278	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6240	0.12790848312017986	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5806	0.11901228413393658	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5379	0.11025957222811657	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4992	0.10232678649614388	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1130	48.82325	1
AACGCAG	58225	34.197132	6
TATCACG	855	33.36795	2
GTATCAA	57835	33.1178	1
GGACCGT	1135	31.943932	6
ACGCAGA	65070	30.544983	7
CGCAGAG	65595	30.40018	8
ATAGTAC	1875	30.114574	4
ACATGGG	55190	30.100647	3
TAGTACT	1955	30.098362	5
TAACGCA	1160	29.718328	4
GTACATG	59270	29.523487	1
CATGGGG	14590	29.249846	4
TACATGG	59515	29.231472	2
CATGGGT	8185	29.191858	4
GCAGAGT	68935	29.022093	9
TCACGCA	1005	28.979067	4
CATGGGC	11590	28.97473	4
ATCAACG	66145	28.772573	3
TATCAAC	66635	28.623434	2