SRR3557589.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557589.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5237201
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65309	1.24702107098811	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35444	0.6767737193970595	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24507	0.4679407950926458	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16818	0.3211257310918561	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	14528	0.2774000845107912	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13081	0.24977082223882566	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	10014	0.19120900649029893	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	9751	0.1861872400925609	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8766	0.16737948381205917	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7728	0.1475597365844847	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	7327	0.13990297489059517	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6882	0.1314060697689472	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6806	0.1299549129391826	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	6634	0.12667071590339957	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6259	0.11951040259863999	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	6008	0.11471776622665426	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	5600	0.10692734535107588	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5553	0.10602991941687936	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1665	52.589622	1
TACAACG	1140	44.83908	2
TAACGCA	1510	40.15007	4
TAGTACT	2450	39.05916	5
ACAACGC	1320	38.27438	3
ATAGTAC	2530	35.709698	4
TCACGCA	900	35.662712	4
GCATAGT	2550	35.196533	2
AGATTAC	3065	34.324635	2
GTATAAC	1665	34.219273	1
CATGGGT	8815	32.837475	4
GATTACT	3195	32.36991	3
TATCACG	995	32.25773	2
ATCACGC	1070	31.663155	3
GTACAAC	1835	31.37593	1
CATGGGG	15280	30.53581	4
AAACGCA	2115	29.508154	5
CATGGGC	15200	28.85864	4
AGTGTAC	2720	28.844843	3
GGTTTCA	3160	28.468567	1