SRR3557585.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557585.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2980610
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42170	1.4148110621651273	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21439	0.7192822945638644	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16624	0.557738181110578	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8026	0.26927373926813636	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6995	0.2346835043833309	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6044	0.20277728384458216	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5947	0.1995229164499884	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4152	0.13930034456034165	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3478	0.11668752369481414	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3442	0.11547971723908865	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3438	0.11534551652178582	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA	3124	0.10481076021351333	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3063	0.10276419927464511	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2981	0.10001308456993703	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	745	54.740356	1
TAGTACT	1145	37.893475	5
ATAGTAC	1145	37.374386	4
TATCACG	385	33.963234	2
AACGCAG	48335	33.741894	6
AGATTAC	1615	33.122036	2
GCATAGT	1305	32.792088	2
GATTACT	1670	32.387096	3
CATGGGG	9885	31.506613	4
GGACCGT	785	31.042828	6
GTATCAA	50850	30.924076	1
AAACGCA	1070	30.55104	5
ACGCAGA	53680	30.326803	7
CGCAGAG	54035	30.171558	8
ACGCATA	340	29.986444	1
TACAACG	555	29.985558	2
TAACGCA	800	29.71783	4
TACGCAG	580	29.71783	5
GTATAAC	940	29.348436	1
GCAGAGT	56235	29.02291	9