SRR3557580.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557580.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5698884
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73265	1.2856025846463974	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38277	0.6716578193204142	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28521	0.5004664071070757	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16557	0.29053056703733576	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	14650	0.25706787504360507	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14016	0.2459428898710695	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8155	0.14309819255840264	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7647	0.13418416658419438	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7517	0.13190301820496783	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7499	0.1315871668909211	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7098	0.1245507015057685	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	7054	0.12377862051587643	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6865	0.12046218171838556	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6463	0.11340816903800813	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	6191	0.10863530473685726	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	6018	0.10559962266296348	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5772	0.1012829880376579	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	990	53.445904	1
AACGCAG	89335	31.801598	6
TATCACG	955	31.392117	2
CATGGGG	19055	31.281158	4
TAGTACT	1730	31.260471	5
CATGGGT	7585	31.154749	4
GTATCAA	91145	30.457922	1
ATAGTAC	1805	29.96156	4
TAACGCA	1105	29.79062	4
ACGCAGA	99195	28.593105	7
CGCAGAG	99275	28.546381	8
TCACGCA	1115	28.469032	4
TACAACG	930	27.811443	2
ACATGGG	78750	27.588951	3
GCAGAGT	104335	27.195753	9
CATGGGC	16515	27.193718	4
AGATTAC	2300	27.091423	2
TATCAAC	103115	26.856232	2
ATCACGC	1170	26.628323	3
GGACCGT	1350	26.561333	6