SRR3557569.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557569.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2582564
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35134	1.3604309515659632	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17349	0.671774252254736	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14373	0.5565399347315304	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6622	0.25641184497267056	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6615	0.2561407965107544	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5423	0.20998511556731994	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4974	0.19259929279584165	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3697	0.14315230910056825	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3463	0.1340915462308001	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3401	0.13169083128239997	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	3316	0.1283995285305611	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3291	0.12743149830943204	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3259	0.1261924196263868	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2826	0.10942613619643114	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2680	0.10377283970503731	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2679	0.10373411849619217	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2655	0.10280480948390824	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2637	0.1021078277246953	No Hit

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	650	57.886715	1
TAACGCA	630	42.921085	4
TACAACG	495	41.563896	2
AGATTAC	1295	39.03751	2
TATCACG	435	36.486137	2
TAGTACT	1080	36.467373	5
GATTACT	1365	35.74365	3
ACAACGC	580	35.472637	3
GGTTTCA	1545	35.00835	1
ATAGTAC	1110	34.95219	4
GCATAGT	1100	34.735546	2
GTATAAC	800	34.53983	1
AAACGCA	795	33.273525	5
AACGCAG	42375	32.710526	6
ATAACGC	900	32.65735	3
GTATCAA	42660	31.104483	1
GACCGTT	480	30.616264	7
GGACCGT	695	30.448868	6
CATGGGG	8475	30.241283	4
TCACGCA	565	30.171923	4