SRR3557543.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557543.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2568382
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27811	1.0828217920854453	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13675	0.532436374339954	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10439	0.4064426553370955	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5475	0.21316922482714798	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5170	0.20129404426600092	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4397	0.17119727517168395	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3158	0.12295678758066361	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2907	0.1131840980041131	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2613	0.101737202643532	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	480	48.989613	1
TACAACG	480	36.739346	2
TAACGCA	465	36.660336	4
AACGCAG	32790	33.50575	6
ACAACGC	535	32.962406	3
CATGGGG	8335	32.79433	4
CATGGGT	3565	32.318256	4
GTATCAA	33330	32.22467	1
ACATGGG	31640	31.509447	3
GTACATG	34545	30.461626	1
TACATGG	34630	30.316593	2
CATGGGC	7805	30.276423	4
TAGTACT	835	30.271461	5
ACGCAGA	36780	29.870945	7
CGCAGAG	36830	29.798473	8
ATAGTAC	880	28.723488	4
GCAGAGT	38575	28.526686	9
TATCAAC	37815	28.307222	2
ATCAACG	37690	28.135965	3
TCAACGC	38275	28.074524	4