SRR3557501.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557501.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4299239
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49296	1.1466215299963551	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24913	0.5794746465595423	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19461	0.45266150590837123	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11695	0.2720248862647552	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	11112	0.2584643468297529	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9137	0.2125259842497707	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5378	0.12509190580007298	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4727	0.10994969109649405	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	4686	0.10899603394926405	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4669	0.10860061513211988	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	4375	0.10176219558856811	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	900	40.327744	1
TATCACG	580	33.851845	2
TACAACG	680	32.373466	2
AACGCAG	59990	31.766502	6
TAACGCA	960	30.988115	4
GTATCAA	61760	30.376186	1
CATGGGT	5735	29.982014	4
CATGGGG	12200	29.455982	4
ACGCAGA	66845	28.508825	7
CGCAGAG	67060	28.479528	8
CATGGGC	11725	28.061356	4
GCAGAGT	70135	27.307222	9
TAGTACT	1380	27.16144	5
TATCAAC	69695	26.711626	2
ACATGGG	54885	26.710587	3
TCAACGC	70435	26.684402	4
ATCAACG	69415	26.562235	3
CAACGCA	71030	26.544329	5
GTACATG	59640	26.138475	1
TACATGG	59365	26.09798	2