SRR3557493.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557493.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4891869
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61922	1.2658147632326213	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31199	0.6377725977535376	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23870	0.48795255964540346	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12044	0.24620446704521318	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10369	0.21196397532313316	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	8579	0.17537264387088042	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8484	0.1734306458329117	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	8478	0.17330799332525051	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7864	0.16075655337458955	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	6267	0.12811054425210489	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6189	0.1265160616525095	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	5875	0.12009724708490763	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5484	0.11210439200232059	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5072	0.1036822531429194	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1320	43.738102	1
TAACGCA	1145	41.5766	4
ATAGTAC	1590	37.79973	4
AGATTAC	2125	37.244072	2
AACGCAG	66985	35.31994	6
GTATCAA	67040	34.074783	1
GACCGTT	915	33.810646	7
ATAACGC	1595	33.57734	3
ACGGTAC	1185	32.640697	3
CATGGGT	6670	32.295883	4
GTATAAC	1405	32.195812	1
GGACCGT	1485	32.056396	6
TATCACG	875	31.963495	2
CGCAGAG	75165	31.525784	8
ACGCAGA	74960	31.508821	7
ACATGGG	63140	30.99729	3
TCACGCA	905	30.903933	4
GATTACT	2575	30.504305	3
GTACATG	66500	30.449123	1
TACATGG	66785	30.321276	2