SRR3557470.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557470.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4069710
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46428	1.1408183875509559	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23426	0.5756184101569891	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17673	0.43425698637003624	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9022	0.2216865575188404	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7318	0.1798162522636748	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6054	0.14875752817768342	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5631	0.1383636671900455	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5066	0.12448061409781042	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4805	0.11806738072245933	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4768	0.11715822503323332	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	985	40.48335	1
AACGCAG	49800	35.101597	6
TAACGCA	695	35.100136	4
GTATCAA	50280	33.972263	1
ACGGTAC	795	33.678684	3
CATGGGT	5145	31.570904	4
ACGCAGA	55920	31.193481	7
CGCAGAG	56080	31.189354	8
ACATGGG	48395	30.77302	3
TATCACG	565	30.539316	2
GTACATG	50955	30.462015	1
ATAGTAC	1390	30.39158	4
TACATGG	51380	30.166391	2
GCAGAGT	59160	29.61585	9
CATGGGG	12750	29.446177	4
AGATTAC	1640	29.38671	2
CATGGGC	11445	29.372599	4
TATCAAC	57715	29.370644	2
ATCAACG	57905	29.222897	3
TCAACGC	59075	29.077213	4