SRR3557461.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557461.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4682667
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65127	1.3908099807225243	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32631	0.6968464765912247	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23526	0.5024060006829442	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12274	0.2621155849860774	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11016	0.23525055272988665	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9151	0.19542282207981052	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	8262	0.17643791454741495	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7731	0.16509822287170967	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7648	0.1633257286926446	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6514	0.13910876002927391	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	6485	0.1384894548341789	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	5401	0.11534025374855825	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	5373	0.11474230390501822	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5241	0.11192339749975815	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	4729	0.10098945750359783	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	4705	0.10047692906627784	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1210	55.588608	1
TAACGCA	1045	44.413795	4
ATAGTAC	1605	43.005356	4
GCATAGT	1880	36.08167	2
AACGCAG	69855	35.94518	6
GTATCAA	69145	35.329643	1
AGATTAC	1835	35.0209	2
CATGGGT	6315	34.10946	4
TAGTACT	2040	33.54234	5
GTATAAC	1295	33.094467	1
CGCAGAG	78435	32.032814	8
ACGCAGA	78310	31.99278	7
CATGGGG	17190	31.9496	4
CATGGGC	15075	31.932344	4
TATCAAC	78375	31.013739	2
ATAACGC	1535	31.011389	3
TCACGCA	960	30.9912	4
ACATGGG	66475	30.899542	3
ATCAACG	78895	30.711279	3
GACCGTT	680	30.622673	7