SRR3557446.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557446.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2423640
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33013	1.3621247379973924	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16327	0.6736561535541582	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12752	0.5261507484609925	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6186	0.25523592612764273	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5870	0.24219768612500206	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4831	0.19932828307834496	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4470	0.1844333316829232	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3868	0.1595946592728293	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3568	0.14721658332095527	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3299	0.13611757521744153	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3018	0.12452344407585285	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3001	0.12382201977191332	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2724	0.11239292964301628	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2611	0.10773052103447707	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2592	0.10694657622419171	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2541	0.10484230331237314	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2449	0.10104636002046508	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	745	54.323822	1
TACAACG	500	51.184223	2
TATCACG	385	47.922413	2
ATAGTAC	885	45.73022	4
ACAACGC	580	44.124336	3
TCACGCA	480	39.677696	4
TAACGCA	560	38.260635	4
AGATTAC	1160	37.967453	2
AACGCAG	35275	36.66267	6
TAGTACT	1125	35.972214	5
GCATAGT	1145	35.34607	2
GTACAAC	805	34.74879	1
GTATCAA	36255	33.882816	1
CATGGGC	7700	33.3911	4
CATGGGG	8130	33.30877	4
ACATGGG	33055	33.18378	3
CATGGGT	3340	33.143944	4
TCTAACG	270	33.064747	2
CGCAGAG	39410	32.86121	8
ACGCAGA	39375	32.784664	7