SRR3557442.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557442.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2128895
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27864	1.3088480173986974	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13250	0.6223886100535725	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10517	0.4940121518440318	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5620	0.2639867161132888	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5255	0.24684167138351115	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4336	0.20367373684470114	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3505	0.16463940213115255	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2972	0.13960293955314845	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2964	0.13922715775085198	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2704	0.12701424917621582	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2687	0.12621571284633576	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2605	0.12236394937279668	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2428	0.11404977699698671	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2338	0.10982223172115112	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2310	0.10850699541311339	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2294	0.10775543180852039	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2224	0.10446734103842603	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	495	55.321484	2
ACAACGC	550	51.954082	3
TAACGCA	665	43.864742	4
CGCATAG	585	42.740005	1
GACCGTT	305	40.957558	7
GTATAAC	825	38.96556	1
TATCACG	355	38.5692	2
GTACAAC	765	38.13079	1
ATAACGC	955	37.4015	3
AGATTAC	1080	35.277466	2
CATGGGT	3980	33.953453	4
GTACTGG	1580	33.533127	1
AACGCAG	33740	32.70495	6
CATGGGG	8050	32.686436	4
ATGGGTG	2330	31.93483	5
GTATCAA	33125	31.845566	1
CATGGGC	6600	31.388926	4
GGACCGT	635	30.913975	6
TACTGGT	1560	30.528574	2
TCACGCA	430	30.457577	4