SRR3557439.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557439.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1468699
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14474	0.9854980496344043	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7312	0.4978555851130831	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6095	0.4149931333785888	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2700	0.18383617065171284	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2397	0.16320566705635395	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2216	0.15088183487562803	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	1859	0.12657460786723487	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1805	0.1228978844542006	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1735	0.11813176151137844	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1662	0.11316137615672102	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	1512	0.10294825556495918	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAACGCA	415	50.20068	4
CGCATAG	385	46.382076	1
GTATAAC	505	45.968765	1
TATCACG	325	45.78743	2
TACAACG	365	40.769634	2
TCACGCA	415	40.16054	4
ATAACGC	550	40.04319	3
ATCACGC	385	38.65173	3
AAACGCA	535	37.82812	5
ACAACGC	395	37.673203	3
AACGCAG	17440	34.72123	6
AGATTAC	785	32.605316	2
GTATCAA	17435	31.887064	1
CGCAGAG	19395	31.34404	8
ACGCAGA	19340	31.279392	7
ACATGGG	16875	31.252127	3
GTACATG	17840	30.929615	1
TACATGG	17950	30.574268	2
CATGGGG	4835	30.28505	4
GCAGAGT	20365	29.880304	9