SRR3557431.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557431.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3568550
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37945	1.0633170335290245	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18778	0.5262081237477406	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14569	0.4082610584130809	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7092	0.19873618136217794	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5084	0.14246682826358045	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5009	0.14036513429824438	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4369	0.12243067912737667	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4292	0.12027293998963164	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3944	0.11052107999047231	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3680	0.10312311723248938	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	600	40.67377	2
AACGCAG	40250	37.24282	6
GTATCAA	39765	36.64362	1
CGCATAG	960	34.101967	1
ACGCAGA	45230	33.12909	7
CGCAGAG	45430	33.127274	8
TATCAAC	45970	31.528717	2
ATCAACG	45965	31.50625	3
GCAGAGT	48125	31.296867	9
TCAACGC	47280	30.995056	4
CAACGCA	47785	30.801924	5
GTATAAC	1025	30.777967	1
ACATGGG	37115	30.58321	3
TAACGCA	840	30.4699	4
CATGGGG	10485	30.258032	4
GTACATG	39050	29.967491	1
ACAACGC	755	29.958393	3
TACATGG	39250	29.82954	2
ATAGTAC	1240	28.801254	4
GGTTTCA	2005	27.60937	1