SRR3557418.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557418.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2455642
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36199	1.474115526611778	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18442	0.7510052361052629	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13476	0.5487770611514219	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7322	0.2981704987942054	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5880	0.23944858411771747	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5608	0.2283720509748571	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4658	0.18968563007148437	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3666	0.14928886213869938	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	3592	0.14627539356306823	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3428	0.1395968956386965	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3395	0.13825305154415832	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3099	0.12619917724163376	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3075	0.1252218360819696	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2930	0.11931706657566535	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2701	0.10999160301053655	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2534	0.10319093744120683	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2481	0.10103264238028181	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	855	58.475677	1
TATCACG	415	48.76129	2
ATAGTAC	1100	45.4497	4
AGATTAC	1155	44.31603	2
TCACGCA	495	43.285423	4
GCATAGT	1220	40.979233	2
TAACGCA	640	39.985035	5
AGTGTAC	1170	39.678307	3
TAGTACT	1275	38.741543	5
ACAACGC	590	38.33328	3
AAACGCA	1060	37.05502	5
GATTACT	1415	36.173157	3
CATGGGT	3690	35.968544	4
TACAACG	600	35.710476	2
CATGGGG	7955	35.164307	4
CATAGTA	1445	35.01027	3
AACGCAG	39885	34.885414	6
ATGGGTG	1965	34.223534	5
ACGGTAC	575	34.157845	3
GTGTACT	1455	32.724377	4