SRR3557412.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557412.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5338309
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63957	1.198076019953135	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32481	0.608451103148956	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24389	0.45686752115698065	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11785	0.22076279211263342	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10486	0.19642924379236945	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	9763	0.18288562913836573	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9028	0.16911722419964825	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	8888	0.16649467087798778	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	8508	0.1593763118620522	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6336	0.11868927032886256	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	6216	0.11644136748172502	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6085	0.11398740687359986	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5474	0.1025418348769245	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1050	43.681046	1
GTATCAA	67520	37.422245	1
AACGCAG	70645	36.60583	6
TAACGCA	1090	33.879456	4
CATGGGT	8360	32.91599	4
ACGCAGA	78415	32.872726	7
CGCAGAG	78830	32.797775	8
TATCAAC	78505	31.964314	2
ATCAACG	79220	31.585596	3
GCAGAGT	82640	31.33695	9
TCAACGC	81230	31.280638	4
CAACGCA	81680	31.21681	5
GTACTGG	4625	30.26549	1
ACATGGG	66725	29.58252	3
TACTGGT	4325	29.471273	2
CATGGGG	18820	29.433002	4
ACGGTAC	1560	29.399324	3
GTACATG	70695	29.009476	1
TACATGG	70710	28.926153	2
ACAACGC	970	28.246023	3