SRR3557407.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557407.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2897178
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28261	0.9754664711660797	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13950	0.48150303502235625	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11465	0.3957299137298433	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5570	0.19225605054297665	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4999	0.1725472166363268	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4776	0.16485007134528842	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4498	0.15525452699143788	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4494	0.15511646160505155	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4023	0.13885926235806015	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	3114	0.10748390330176467	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	555	54.734478	1
ACGGTAC	705	38.01825	3
GTATCAA	32850	35.702126	1
AACGCAG	34205	35.445274	6
TACAACG	560	34.035385	2
TAACGCA	615	32.928547	4
ATAGTAC	965	32.095547	4
ACGCAGA	38120	31.66452	7
CGCAGAG	38425	31.583488	8
ACAACGC	595	31.032265	3
GTACTGG	2480	30.982882	1
ATCAACG	37755	30.920773	3
TATCAAC	37890	30.873484	2
TCAACGC	38710	30.681086	4
CAACGCA	39040	30.496447	5
TAGTACT	1055	30.485096	5
CATGGGT	3645	30.393742	4
GCAGAGT	40295	30.118288	9
TACTGGT	2310	29.909885	2
TATCACG	460	29.780964	2