SRR3557395.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557395.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3481857
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38186	1.0967136214956559	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18606	0.5343700215143816	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15156	0.43528496431645525	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6970	0.20018053584624526	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6213	0.17843926387556983	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6001	0.17235055891152334	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5516	0.15842121029094533	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5402	0.1551470953574486	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5312	0.15256226777837228	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	3763	0.10807451311182509	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3581	0.10284741734080406	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3580	0.10281869703436988	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	600	50.626648	1
TAACGCA	580	41.074615	4
GTATCAA	41675	37.401436	1
AACGCAG	43390	36.92285	6
ACGCAGA	48290	33.040764	7
CGCAGAG	48570	32.874786	8
ACAACGC	655	32.734272	3
TATCAAC	48315	32.099663	2
ATCAACG	48630	31.867243	3
TCAACGC	49910	31.563095	4
CAACGCA	50200	31.40268	5
GCAGAGT	51180	31.198286	9
TACAACG	650	31.153515	2
TATCACG	515	30.068213	2
CATGGGG	12185	29.86463	4
CATGGGT	4355	29.676527	4
ATAGTAC	1070	29.500786	4
GTACTGG	2615	29.154022	1
AGATTAC	1370	29.126999	2
ACATGGG	40580	28.531572	3