SRR3557389.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557389.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2522522
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32539	1.289939195773119	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15259	0.6049104824457429	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12721	0.5042968901757844	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5764	0.22850147590387718	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5454	0.21621218764395317	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5050	0.20019647004069735	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4829	0.19143539679733218	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4670	0.18513218120595182	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4501	0.1784325369610255	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	3340	0.1324071702843424	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3340	0.1324071702843424	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3050	0.1209107393315103	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2858	0.11329930918342833	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2750	0.10901787972513223	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2688	0.10656002207314742	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2609	0.10342823571013453	No Hit
CTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT	2537	0.1005739494046038	No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC	2524	0.1000585921549941	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	640	53.055367	1
TAACGCA	540	38.607727	4
GTATCAA	35595	38.107323	1
AGATTAC	1050	37.441616	2
AACGCAG	37375	37.293327	6
ATAGTAC	940	36.119934	4
ACGGTAC	660	36.10073	3
TAGTACT	1025	34.286892	5
TATCACG	490	34.037834	2
CATGGGT	4270	33.898335	4
TACTGGT	2010	33.783817	2
GATTACT	1165	33.745663	3
ACGCAGA	41810	33.20938	7
CGCAGAG	41970	33.15365	8
TATCAAC	41440	32.629173	2
ATCAACG	41595	32.464622	3
GTACTGG	2195	32.29586	1
TCACGCA	520	32.074112	4
TCAACGC	42735	31.988873	4
CAACGCA	42995	31.89241	5