SRR3557380.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557380.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5693915
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58272	1.0234083227445439	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29593	0.5197302734585957	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21271	0.3735742454883854	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	11860	0.2082925368573293	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	11698	0.20544739427968278	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	11115	0.1952083935218562	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10928	0.19192418573160996	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10297	0.18084217976559186	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9537	0.16749459730255895	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	7747	0.13605752808041569	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	7702	0.1352672106977361	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	7652	0.13438908027253654	No Hit
CTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT	6429	0.11291001007215598	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	6098	0.10709678665733507	No Hit
GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATACCACGT	6040	0.1060781553641036	No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC	6017	0.10567421536851183	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1110	39.17704	1
GTATCAA	60910	38.269512	1
CATGGGT	8510	37.099697	4
AACGCAG	66415	36.000084	6
CATGGGG	19800	33.36495	4
TACTGGT	4490	32.90254	2
GTACTGG	4805	32.729717	1
ACGCAGA	73930	32.219963	7
CGCAGAG	74270	32.152565	8
TATCAAC	72360	32.14745	2
ATCAACG	72350	31.978992	3
TCAACGC	73975	31.711357	4
CAACGCA	74550	31.553555	5
ACATGGG	64715	31.416327	3
GTACATG	69415	30.671352	1
GCAGAGT	77995	30.625137	9
TACATGG	69420	30.574213	2
ACGGTAC	1435	30.303658	3
ATGGGTG	4855	29.814383	5
TATCACG	825	29.604246	2