SRR3557364.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557364.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3445455
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47006	1.3642900574815229	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24465	0.7100658693844499	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18486	0.5365329107476371	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8947	0.25967542748345285	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	8334	0.2418838731023914	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	6716	0.19492345713410855	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6131	0.17794456755348712	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	5647	0.16389707600302428	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5037	0.14619259285058142	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4930	0.1430870523631857	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	4805	0.13945908450407857	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4670	0.13554087921624286	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	4489	0.1302875817562557	No Hit
CTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT	3880	0.11261212234668572	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3824	0.1109867927458057	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	3818	0.11081265028856857	No Hit
GTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCC	3563	0.10341159585599	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3528	0.10239576485543998	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	700	44.22817	1
GTATCAA	40915	40.68631	1
GTACTGG	3450	39.86452	1
AACGCAG	43630	38.954086	6
TACTGGT	3265	38.811096	2
TAACGCA	725	38.56731	4
ACGCAGA	49185	34.469913	7
TATCAAC	48260	34.40583	2
GGTTCAC	3555	34.303802	6
CGCAGAG	49610	34.270046	8
ATCAACG	48475	34.179592	3
TCAACGC	49655	33.73876	4
ACATGGG	40180	33.477276	3
CAACGCA	50165	33.464485	5
ACGGTAC	1035	33.33858	3
GTACATG	42260	33.00931	1
TACATGG	42280	32.940178	2
ACTGGTT	3740	32.92746	3
GCAGAGT	51800	32.79821	9
GGACCGT	745	32.73826	6