SRR3557340.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557340.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5282300
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62260	1.1786532381727657	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33935	0.6424284875906329	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23227	0.4397137610510573	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11890	0.22509134278628629	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	10400	0.19688393313518732	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	9763	0.18482479223065712	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9188	0.17393938246597127	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7897	0.14949927115082445	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6791	0.12856142210779395	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6671	0.12628968441777258	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	6658	0.1260435795013536	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6512	0.12327963197849422	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	6450	0.12210590083864983	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	6165	0.11671052382484903	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5879	0.11129621566363136	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5652	0.10699884520000756	No Hit
CTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT	5558	0.10521931734282415	No Hit
TATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCA	5414	0.10249323211479848	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1035	44.869953	1
TATCACG	860	42.892567	2
GTATCAA	58610	37.60677	1
AACGCAG	60870	37.364304	6
GTACTGG	4665	35.35326	1
TAACGCA	1025	34.827007	4
TACTGGT	4380	33.687313	2
ACATGGG	58430	33.42903	3
ACGCAGA	68275	33.3554	7
CGCAGAG	68670	33.310493	8
CATGGGG	17055	33.210392	4
GTACATG	61840	32.677116	1
TACATGG	61685	32.658493	2
TACAACG	935	32.45244	2
TCACGCA	1175	32.406406	4
TATCAAC	68905	32.034058	2
ATCAACG	69075	31.843246	3
TCAACGC	70880	31.535975	4
CATGGGC	13945	31.529325	4
GCAGAGT	72705	31.519096	9