SRR3557213.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557213.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2928595
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34648	1.1830929165692081	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16748	0.5718783239061734	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13054	0.44574275377783545	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6556	0.2238616128211651	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4964	0.16950107474744713	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3955	0.13504769351856435	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3771	0.12876481725878794	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3183	0.10868693008080667	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3009	0.10274551448732241	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3006	0.10264307628743476	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2968	0.1013455257555244	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2960	0.10107235722249064	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	520	40.038296	1
AACGCAG	35480	37.943676	6
GTATCAA	34740	37.567966	1
TAACGCA	740	35.340748	4
TACAACG	475	33.785084	2
ACGCAGA	39795	33.665123	7
CGCAGAG	39925	33.555504	8
ACATGGG	35010	32.850628	3
CATGGGT	4910	32.805195	4
TCAACGC	40550	32.74516	4
ATCAACG	39815	32.64802	3
TATCAAC	39890	32.57174	2
CATGGGG	8910	32.28661	4
CAACGCA	41045	32.27785	5
GTACATG	36520	32.202293	1
TACATGG	36490	32.088333	2
GTATAAC	1045	31.877378	1
GCAGAGT	42200	31.74653	9
CATGGGC	8025	29.699842	4
TATCACG	505	29.424116	2