SRR3557179.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3557179.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4068946
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44306	1.0888814941264888	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23524	0.578134976477938	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17286	0.4248274614605355	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11675	0.28692934238989654	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	10079	0.24770542543449828	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9073	0.22298157803028107	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5664	0.13920066769133824	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5566	0.136792181562498	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4986	0.12253787590201491	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4874	0.1197853203261975	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	4679	0.11499292445758681	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4453	0.10943866052781236	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	890	46.892246	1
TAACGCA	920	35.77719	4
TACAACG	710	35.597225	2
AGATTAC	2165	32.0354	2
TATCACG	760	31.708544	2
GATTACT	2255	30.496174	3
CATGGGG	11240	29.4407	4
TCACGCA	885	29.22237	4
AACGCAG	58170	29.100433	6
TTCAACG	2410	29.02258	4
AAACGCA	1280	28.92921	5
TAGTACT	1555	28.348944	5
CATGGGT	4705	28.107935	4
ACAACGC	955	27.695879	3
ACATGGG	52085	27.060919	3
ACGCAGA	63905	26.452095	7
GTATCAA	61800	26.413145	1
CGCAGAG	64210	26.3356	8
CATGGGC	11220	26.297646	4
GTATAAC	1350	26.124634	1