SRR3556963.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556963.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2017001
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24702	1.2246895266784696	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11831	0.586563913453687	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10043	0.4979174526933799	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7039	0.3489834660468686	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6108	0.3028258290402434	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4993	0.24754573745873204	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3495	0.17327705836536522	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3427	0.1699057164572551	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3396	0.16836878117561668	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3212	0.1592463266007305	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3076	0.15250364278451026	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	3038	0.15061965760056636	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3036	0.15052050048562196	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2939	0.14571138041081783	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2772	0.1374317613129592	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2713	0.13450662642209896	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2308	0.11442731064585492	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	2160	0.1070896841399682	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	475	62.645718	1
TAACGCA	450	40.937164	4
TACAACG	385	40.13708	2
TCACGCA	390	39.616608	4
GTACTGG	1750	35.36798	1
GACCGTT	320	33.426517	7
GCATAGT	945	33.333214	2
CATGGGG	6900	33.15738	4
ATAGTAC	900	33.013844	4
TAGTACT	925	32.764004	5
ACAACGC	455	32.651054	3
GTATAAC	660	32.461872	1
TATCACG	440	32.41841	2
TACTGGT	1590	31.772762	2
CATGGGT	2690	31.369286	4
GGTTCAC	1630	30.988451	6
ATGGGTG	1760	30.72538	5
AAACGCA	600	30.702871	5
ATAACGC	620	30.670921	3
AGATTAC	975	30.478846	2