SRR3556945.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556945.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2162833
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26982	1.247530438087453	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12900	0.5964399470509282	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11230	0.5192264035179784	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8185	0.37843883462107336	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7013	0.3242506471835782	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5501	0.25434233711063226	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3732	0.17255146375147778	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3526	0.163026918860587	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3463	0.1601140726075476	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	3367	0.15567544974577327	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	3213	0.14855515890501025	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3065	0.14171228199310812	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2826	0.1306619604934824	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2792	0.1290899482299373	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2596	0.12002775988714802	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2443	0.11295370470119515	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	2341	0.10823766791055989	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2288	0.10578717820562199	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	550	56.268726	1
TATCACG	355	40.18433	2
TAGTACT	875	37.360996	5
ATAGTAC	870	36.89252	4
TACAACG	360	36.324036	2
GACCGTT	345	34.456783	7
GGACCGT	675	34.34193	6
TCACGCA	455	33.964542	4
TAACGCA	675	30.819681	4
GCATAGT	1015	30.451674	2
AGATTAC	1100	30.26002	2
CATGGGG	6685	30.23022	4
GATTACT	1070	29.996723	3
GTATAAC	675	29.977928	1
CATGGGC	7000	28.784948	4
AAACGCA	785	28.77251	5
CATGGGT	2570	28.215681	4
AACGCAG	38770	28.086233	6
ACAACGC	495	27.617632	3
ATAACGC	800	27.490051	3