SRR3556816.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556816.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5536588
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71194	1.2858822075978924	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34823	0.6289613747672754	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26791	0.4838900781492139	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	24036	0.43413018992924884	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	21633	0.3907280079355733	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14680	0.26514524830093916	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	10342	0.1867937437280867	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	9583	0.17308493967764985	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	8627	0.15581798754034074	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8451	0.15263913442719595	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	7828	0.14138671687328008	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6991	0.12626910292042678	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	6944	0.12542020464589382	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	6936	0.12527571132256907	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	6811	0.12301800314561966	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6719	0.12135632992738488	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	6294	0.11368012212575687	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	6030	0.1089118424560397	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1430	64.50706	1
TAACGCA	1370	43.395786	4
AGATTAC	2925	39.84059	2
GTATAAC	1730	38.184616	1
ATAGTAC	2445	36.71692	4
ATAACGC	1880	36.68428	3
TACAACG	1045	35.84428	2
TAGTACT	2655	35.156624	5
GCATAGT	2605	34.692165	2
TATCACG	975	34.14908	2
GATTACT	3430	33.97362	3
CATGGGG	15705	30.549475	4
TTCAACG	3155	30.338535	4
TCACGCA	1175	29.85261	4
CATGGGT	5550	29.672554	4
GACCGTT	1105	29.591871	7
AACGCAG	92040	29.261301	6
ACAACGC	1345	29.174372	3
ATTACTT	4190	28.661932	4
AGTGTAC	2765	28.598047	3