SRR3556717.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556717.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4826690
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	76198	1.5786802135625035	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37618	0.779374685343372	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29295	0.6069376736438429	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16253	0.33673179756727695	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10990	0.22769226944344884	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8858	0.183521212259333	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7695	0.15942602487418914	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7364	0.15256832321943195	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	7362	0.15252688695565697	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7038	0.14581421222411217	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	6748	0.1398059539767418	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6219	0.1288460622082628	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5910	0.12244415945503026	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5640	0.11685026384540959	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	5633	0.1167052369221972	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1435	64.71002	1
AGATTAC	2595	45.826244	2
TAACGCA	1380	44.80871	4
ATAGTAC	2080	44.59328	4
GTATAAC	1540	43.67738	1
TACAACG	1040	41.736034	2
ACAACGC	1150	40.84486	3
TAGTACT	2280	40.68159	5
GCATAGT	2340	39.3856	2
GTACAAC	1360	37.64076	1
GATTACT	3140	37.49244	3
AACGCAG	75365	36.551125	6
AAACGCA	1590	35.89899	5
GGACCGT	1480	35.353233	6
CATAGTA	2675	35.118946	3
CATGGGT	8335	34.954144	4
ACGGTAC	1010	34.73272	3
GACCGTT	930	34.52383	7
CATGGGG	15715	34.089336	4
TCACGCA	995	34.0612	4