SRR3556681.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556681.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1695906
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26594	1.5681293656605966	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9587	0.5653025580427218	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8956	0.5280953071691473	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3659	0.21575488264090106	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3526	0.20791246684662948	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3399	0.20042384424608436	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3064	0.18067039092968595	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2904	0.17123590576364492	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2787	0.1643369384859774	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2633	0.1552562465136629	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2044	0.12052554799617432	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2027	0.11952313394728245	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	1860	0.10967589005522711	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1839	0.10843761387718423	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	1826	0.10767106195744339	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AACGCAG	24230	42.03454	6
GTATCAA	23990	41.93572	1
GACCGTT	350	39.071682	7
TATCAAC	26530	37.852512	2
ATCAACG	26800	37.360237	3
ACGCAGA	27520	36.836494	7
TCAACGC	27440	36.81388	4
CGCAGAG	27540	36.809742	8
CAACGCA	27700	36.425404	5
TACTGGT	1340	36.38408	2
GCAGAGT	28855	35.07041	9
GTACTGG	1605	34.86426	1
GGACCGT	630	33.97538	6
GGTTCAC	1440	33.857407	6
TAACGCA	265	33.654858	4
TACAACG	265	33.654858	2
ACATGGG	22780	33.565228	3
CATGGGT	2535	33.539795	4
CATGGGG	6145	32.800472	4
TACATGG	24170	32.766487	2