SRR3556680.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556680.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4363798
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71117	1.6297042163729851	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34611	0.7931393707958068	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26215	0.6007381643238299	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11446	0.26229445084305003	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	10771	0.2468262738101076	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	9473	0.21708154227120502	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	9309	0.21332334814764567	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6925	0.15869203844907578	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	6715	0.15387971670549372	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	6419	0.14709663462882563	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6284	0.14400299922223714	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	5428	0.12438705916268351	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4899	0.11226459153242199	No Hit
AGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTA	4650	0.10655855289360323	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	4581	0.10497736146356912	No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGT	4364	0.10000462899520098	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	55410	46.51139	1
AACGCAG	60470	42.905838	6
TATCAAC	66100	38.88395	2
ATCAACG	67105	38.282562	3
TCAACGC	68600	37.638935	4
CGCAGAG	69195	37.435574	8
ACGCAGA	69275	37.40092	7
CAACGCA	69600	37.19211	5
GCAGAGT	72660	35.64217	9
TACTGGT	3495	34.7032	2
GACCGTT	1025	33.641533	7
ACATGGG	52260	32.911724	3
GTACTGG	4185	32.85308	1
TACATGG	54965	32.22336	2
GTACATG	55120	32.189358	1
CATGGGT	4310	30.347092	4
CATGGGG	16540	30.157692	4
GGTTCAC	4015	29.46722	6
GGACCGT	1735	29.126686	6
CATGGGA	25955	29.044899	4