SRR3556679.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556679.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1678798
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29515	1.7581031190172969	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14414	0.8585904915302496	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11193	0.6667270273135899	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5596	0.3333337304428526	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4060	0.2418396972119338	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2999	0.17863971722625355	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2720	0.16202068384641868	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2717	0.16184198456276455	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2669	0.15898279602429835	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2596	0.15463444678871432	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2488	0.14820127257716534	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2372	0.14129156694253864	No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2164	0.12890174994251838	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2140	0.1274721556732853	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1807	0.10763653518767594	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	1730	0.10304992024055305	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	470	64.60218	1
TACAACG	415	57.308258	2
TAACGCA	450	56.81308	4
ATAACGC	535	50.00934	3
ACAACGC	530	45.99391	3
GTATAAC	575	45.557476	1
GTACAAC	595	45.02673	1
TATCACG	415	40.11578	2
TCACGCA	420	39.63703	4
AACGCAG	28900	38.553528	6
ATAGTAC	805	36.92891	4
GTATCAA	29490	36.54085	1
AAACGCA	570	35.464714	5
CATGGGG	6170	35.461334	4
AGATTAC	875	34.655125	2
ACGCAGA	32740	33.977192	7
CGCAGAG	32880	33.922935	8
ACATGGG	25980	33.36651	3
GTACTGG	1295	33.100727	1
TACATGG	27085	32.92818	2