SRR3556670.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556670.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5342464
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66724	1.2489368201638795	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33513	0.6272948212659927	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24314	0.4551083544971009	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	18761	0.35116755115242704	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	16657	0.31178497412429923	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12370	0.2315411016340026	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	8440	0.15797953902918205	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7620	0.1426308160429345	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7315	0.13692183981024486	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	7292	0.13649132684843546	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7257	0.13583619842829078	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	6258	0.11713696152187456	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5883	0.11011772844889547	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	5795	0.10847054842110307	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	5743	0.10749721476831664	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	5706	0.10680465043844939	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1205	43.959682	1
TACAACG	965	32.038795	2
AACGCAG	83100	30.507614	6
ACGGTAC	1215	30.339434	3
GTATCAA	83090	29.698338	1
TAGTACT	1850	29.24568	5
ATAGTAC	1835	29.160736	4
TATCACG	900	29.067677	2
CATGGGG	16865	28.943356	4
TAACGCA	1040	28.584375	4
GACCGTT	980	28.514374	7
GTACTGG	3945	28.061932	1
ACGCAGA	91315	27.71747	7
ACAACGC	1180	27.71231	3
CGCAGAG	91460	27.69953	8
AAACGCA	1610	27.327374	5
GGACCGT	1680	27.250439	6
TACTGGT	3405	27.240036	2
CATGGGT	6480	27.066933	4
CATGGGC	14045	26.880913	4