SRR3556667.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556667.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3651362
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45379	1.2427965235985914	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22891	0.6269167505166565	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17464	0.47828728019845745	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8643	0.23670619346972446	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6149	0.16840291376204278	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5732	0.15698251775638788	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4886	0.13381308125570676	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4063	0.11127354669298745	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3981	0.10902780934894979	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	895	47.87841	1
TACAACG	655	47.199795	2
ACAACGC	820	41.326923	3
TCACGCA	675	39.635185	4
TAACGCA	780	38.872967	4
AACGCAG	46780	37.288246	6
TATCACG	695	36.784233	2
GTATCAA	47620	35.444355	1
AGATTAC	1605	34.07931	2
TAGTACT	1360	33.22361	5
ACGCAGA	52445	33.147087	7
CGCAGAG	52595	33.07516	8
GCAGAGT	55640	31.22232	9
ATAGTAC	1410	31.202164	4
ATCACGC	840	31.141926	3
TATCAAC	54415	30.876749	2
ATCAACG	54315	30.83466	3
TCAACGC	55620	30.549448	4
CATGGGG	10940	30.324173	4
CAACGCA	56345	30.28298	5