SRR3556652.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556652.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2197427
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27660	1.2587448866333217	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13515	0.6150374961261511	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10439	0.4750555991166032	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5254	0.2390978175839288	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5251	0.23896129427735258	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3785	0.17224690513040936	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3016	0.13725143087802233	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2558	0.11640887274070993	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2412	0.10976473848733086	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2316	0.10539599267688983	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2304	0.10484989945058472	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	550	48.70548	1
TAACGCA	465	42.19538	4
ATAGTAC	770	37.064186	4
TACAACG	400	34.188633	2
CATGGGT	3640	33.81216	4
AACGCAG	31570	33.0715	6
AGATTAC	890	32.067497	2
TAGTACT	860	31.80265	5
GTATCAA	32000	31.49452	1
CATGGGC	6330	30.526962	4
ACGGTAC	430	30.419928	3
ACAACGC	450	30.3892	3
GCATAGT	990	30.02954	2
ACATGGG	28785	29.867992	3
CGCAGAG	35125	29.62277	8
ACGCAGA	35075	29.59719	7
CATGGGG	6795	28.962927	4
GTACATG	31700	28.412384	1
GCAGAGT	36680	28.399372	9
AAACGCA	670	28.397436	5