SRR3556609.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556609.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1934367
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31275	1.6168079790443075	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15466	0.7995380400927022	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10995	0.5684029969493897	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6002	0.31028238178174045	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4294	0.22198476297414088	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3418	0.17669863061146102	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3337	0.17251121426285704	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3268	0.16894415589182404	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3085	0.15948369673386695	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2987	0.15441743991703746	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2862	0.14795537765067332	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2862	0.14795537765067332	No Hit
GTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAAAAAAAAAAAAAAA	2804	0.14495698075908037	No Hit
GTATCAACGCAGAGTACATGGGCTTTTGTGATGAAGATGGGAGGGGGAAA	2457	0.1270182959076535	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2406	0.12438177450297694	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2186	0.11300854491417606	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1995	0.10313451377117165	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	1940	0.10029120637397143	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	345	49.96176	2
CGCATAG	540	42.959118	1
ACAACGC	425	39.15867	3
AACGCAG	30875	38.174606	6
GTATCAA	31045	37.093533	1
AGATTAC	860	35.24768	2
CGCAGAG	34650	34.015614	8
ACGCAGA	34650	33.981308	7
CATGGGG	7005	33.855057	4
CATGGGC	6765	33.562508	4
ACATGGG	28360	32.88331	3
TAACGCA	435	32.792973	4
GCAGAGT	36225	32.602303	9
TATCAAC	35200	32.555412	2
ATCAACG	35365	32.47075	3
ATGGGAC	2270	32.206097	5
TCAACGC	36180	32.15001	4
GTACTGG	1675	31.960402	1
CAACGCA	36620	31.84487	5
GTACATG	30745	31.709467	1