SRR3556519.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3556519.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4039479
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42713	1.0573888365306516	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21724	0.5377921261628047	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16423	0.4065623314293749	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9444	0.23379252621439547	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8413	0.20826943276595816	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8068	0.19972872739281475	No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5403	0.1337548728437504	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4816	0.11922329587553246	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4289	0.10617705897220904	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4207	0.10414709421685321	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4150	0.10273602115520343	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4098	0.10144872643229486	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1000	43.77784	1
TAACGCA	1125	35.927513	4
TATCACG	655	32.66871	2
GTATAAC	1430	31.033241	1
CATGGGT	5425	30.89727	4
CATGGGG	12300	30.879232	4
AACGCAG	55940	30.824497	6
TACAACG	830	30.077515	2
GTATCAA	56370	29.213524	1
ACATGGG	51790	29.059525	3
TAGTACT	1675	28.743586	5
GTACATG	56155	28.172009	1
GTACTGG	2740	28.015013	1
TACATGG	56080	27.981222	2
CGCAGAG	61630	27.978619	8
ACGCAGA	61605	27.932083	7
CATGGGC	11400	27.894567	4
ACAACGC	895	27.893112	3
AGATTAC	1890	27.360764	2
ATAGTAC	1660	26.854923	4