SRR3129007.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3129007.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5670010
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	198039	3.492745162706944	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT	19337	0.3410399628924817	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	19102	0.3368953493909182	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT	18621	0.32841211920261165	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	17282	0.3047966405702988	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	12310	0.2171072008691343	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC	9073	0.16001735446674697	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC	8781	0.15486745173288935	No Hit
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	8768	0.1546381752413135	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	7862	0.1386593674437964	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	6442	0.11361531990243404	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	6038	0.10649011201038447	Illumina Single End Adapter 2 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	5828	0.10278641483877453	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	55780	89.783516	1
GGTAAGG	2700	71.414505	1
AGGGACT	10745	70.20046	5
GACTTAA	7910	69.63234	8
GGATAGG	2955	69.548904	1
AGTAGGG	8300	69.254875	2
ATAGGGA	3685	69.001396	3
ATAGGGC	2665	68.25145	3
ATAGAGG	3625	67.98132	1
ACTTAAT	8050	67.95429	9
GTTTTTT	74560	67.18492	2
AGTAAGG	3180	67.14212	1
GGACTTA	8335	67.0421	7
AGATAGG	2940	67.024414	1
TAGTAGG	1870	66.64547	1
GTAGGGC	2230	65.96865	3
AGGGAAT	5210	65.7599	5
TATAGGG	3620	65.696754	2
AAGGGGC	18330	65.56184	4
GTAGGGA	3655	65.45285	3