SRR3129004.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3129004.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10734594
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	405999	3.7821551518389986	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	38274	0.35654818430953233	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	21881	0.20383630717659187	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	20131	0.18753387412695813	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	19981	0.1861365227227038	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	16709	0.1556556307579029	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	16421	0.1529727160617346	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	13811	0.12865880162770946	No Hit
ATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTGGTAACTATGGTGGT	11790	0.10983182037438957	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	10773	0.10035777785354527	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	115075	89.302345	1
ATAGGGC	4695	73.314896	3
ATAGGGA	7280	73.154594	3
AGGGACT	22040	70.42923	5
GGTAAGG	5830	69.10123	1
GTAGGGA	7310	69.05385	3
AGTAGGG	16190	69.04821	2
GGATAGG	5680	68.93517	1
TAGGGAT	4650	68.8599	4
GACTTAA	16245	67.896805	8
AGATAGG	5360	67.77629	1
TAGGGAC	4770	66.53528	4
ACTTAAT	16500	66.30633	9
AAGGGGC	36195	66.19253	4
GTTTTTT	156010	66.16773	2
GATAGGG	14395	66.01278	2
GGACTTA	17010	65.89311	7
AATAGGG	13100	65.45717	2
GAATAGG	6035	64.880165	1
ATAAGGG	12735	64.781906	2