SRR3129002.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3129002.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10805915
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	382735	3.5419027449318268	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	38563	0.35686936275178915	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	22984	0.2126983230943423	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	20187	0.1868143512141267	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	20182	0.18676808025974664	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	16874	0.15615521684188705	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	16753	0.15503545974588917	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	13649	0.1263104512667368	No Hit
ATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTGGTAACTATGGTGGT	11720	0.10845911706690271	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	11032	0.10209223374420398	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	111415	89.360016	1
ATAGGGC	4650	70.84931	3
AGGGACT	22610	70.31889	5
AGTAGGG	16270	69.48175	2
GGTAAGG	5770	69.1662	1
ATAGGGA	7430	69.13563	3
GACTTAA	16640	68.51853	8
AGATAGG	5700	68.034035	1
TATAGGG	7285	67.648094	2
ATAGAGG	7125	67.1093	1
GGATAGG	6090	67.00014	1
AAGGGGC	36335	66.7543	4
GGACTTA	17515	66.16884	7
GTTTTTT	151480	66.04472	2
ACTTAAT	17235	65.853134	9
TAGGGAT	4780	65.57956	4
TAGTAGG	3940	65.57677	1
GTAGGGA	7785	65.137856	3
GATAGGG	15330	64.785164	2
AGGGGCT	46050	64.19358	5